These java tools have been developed as part of the NIH funded "Electronic
Atlas of the Developing Human Brain" project. The tools replace
and extend some of the C/X11/Motif tools developed as part of the Mouse
Atlas project and use the same underlying image processing libraries.
We have tested each of these under MS Windows, Solaris, Linux (Mandrake,
Redhat) and Mac OSX. Click on each tool for more information.
Install - use this
link to install the required Java environment, after that the tools can
be started by simply clicking on the link on the appropriate page, the
"start" link below or directly from Java Webstart.
| JAtlasViewer |
A 3D volume browser providing section and 3D visualisation. The
volume data can include segmentations for example labelled anatomy,
the viewer provides feedback and navigation through the anatomical
nomenclature. Example data-sets for human and mouse embryo. |
Start |
| JConvert |
An image format converter for generating volume data suitable for
the Atlas Viewers. This allows conversion from a range of 2D and 3D
image formates to the native Woolz format used in the MRC software. |
Start |
| Gene
Expression Viewer |
A prototype viewer for gene-expression data that has been mapped
onto a refererence volume, for example as obtained by query on the
EMAGE database. |
Start |
| JReconstruct |
A java version of the Reconstruct program. This implementation
is incomplete and currently only allows simple re-stacking of 2D image
files. Work in progress. |
Start |
| JWarp |
Tools to support 3D warping of data by defined a series of "tie-points"
or correspondences between two data volumes. |
Start |
| JProcessing |
A 3D image processing GUI tool, which supports affine transform, threshold, dialation , erosion, set voxelsize and set value, etc. This product is under development. |
Start |
|
